HL_5WLC_002

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAGAAAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_002 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2587

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5WLC|1|L0|A|195
5WLC|1|L0|A|196
5WLC|1|L0|G|197
5WLC|1|L0|A|198
5WLC|1|L0|A|199
5WLC|1|L0|A|200
5WLC|1|L0|U|201
5WLC|1|L0|U|202

Current chains

Chain L0

5' ETS

Nearby chains

Chain SV

Rrt14

Chain SY

Utp11