HL_5WLC_006

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAACACC

Length

10 nucleotides

Bulged bases

5WLC|1|L0|C|430, 5WLC|1|L0|C|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_006 not in the Motif Atlas

Geometric match to HL_8C3A_199

Geometric discrepancy: 0.3902

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5WLC|1|L0|G|424
5WLC|1|L0|U|425
5WLC|1|L0|G|426
5WLC|1|L0|A|427
5WLC|1|L0|A|428
5WLC|1|L0|A|429
5WLC|1|L0|C|430
5WLC|1|L0|A|431
5WLC|1|L0|C|432
5WLC|1|L0|C|433

Current chains

Chain L0

5' ETS

Nearby chains

Chain SD

Nop1

Chain SY

Utp11