HL_5WLC_008

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_008 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.251

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5WLC|1|L0|A|553
5WLC|1|L0|G|554
5WLC|1|L0|A|555
5WLC|1|L0|U|582
5WLC|1|L0|U|583
5WLC|1|L0|U|584

Current chains

Chain L0

5' ETS

Nearby chains

Chain LP

Utp6

Chain LS

Utp18

Chain SQ

Fcf2