HL_5WLC_009

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5WLC|1|L1|U|158, 5WLC|1|L1|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_009 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.327

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5WLC|1|L1|G|154
5WLC|1|L1|U|155
5WLC|1|L1|A|156
5WLC|1|L1|A|157
5WLC|1|L1|U|158
5WLC|1|L1|U|159
5WLC|1|L1|C|160

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L6

rpS6_eS6

Chain LX

Kre33