HL_5WLC_014

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAUAAGGGUUCGAUU

Length

17 nucleotides

Bulged bases

5WLC|1|L1|G|365, 5WLC|1|L1|G|371, 5WLC|1|L1|G|372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_014 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3799

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5WLC|1|L1|G|364
5WLC|1|L1|G|365
5WLC|1|L1|A|366
5WLC|1|L1|A|367
5WLC|1|L1|U|368
5WLC|1|L1|A|369
5WLC|1|L1|A|370
5WLC|1|L1|G|371
5WLC|1|L1|G|372
5WLC|1|L1|G|373
5WLC|1|L1|U|374
5WLC|1|L1|U|375
5WLC|1|L1|C|376
5WLC|1|L1|G|377
5WLC|1|L1|A|378
5WLC|1|L1|U|379
5WLC|1|L1|U|380

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L4

rpS4_eS4

Chain L9

rpS9_uS4

Chain NC

Lcp5