HL_5WLC_015

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

5WLC|1|L1|A|400, 5WLC|1|L1|C|402, 5WLC|1|L1|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_015 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.353

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5WLC|1|L1|C|393
5WLC|1|L1|C|394
5WLC|1|L1|U|395
5WLC|1|L1|G|396
5WLC|1|L1|A|397
5WLC|1|L1|G|398
5WLC|1|L1|A|399
5WLC|1|L1|A|400
5WLC|1|L1|A|401
5WLC|1|L1|C|402
5WLC|1|L1|G|403
5WLC|1|L1|G|404

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L6

rpS6_eS6

Chain L8

rpS8_eS8

Chain LV

Enp2