HL_5WLC_017

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

5WLC|1|L1|A|452, 5WLC|1|L1|U|454, 5WLC|1|L1|C|455

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_017 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3176

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5WLC|1|L1|U|450
5WLC|1|L1|A|451
5WLC|1|L1|A|452
5WLC|1|L1|U|453
5WLC|1|L1|U|454
5WLC|1|L1|C|455
5WLC|1|L1|A|456

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L4

rpS4_eS4

Chain LF

rpS24_eS24