HL_5WLC_022

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_022 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.3134

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5WLC|1|L1|A|900
5WLC|1|L1|G|901
5WLC|1|L1|G|902
5WLC|1|L1|U|903
5WLC|1|L1|G|904
5WLC|1|L1|A|905
5WLC|1|L1|A|906
5WLC|1|L1|A|907
5WLC|1|L1|U|908
5WLC|1|L1|U|909

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NG

rpS14_uS11

Chain NK

Krr1