HL_5WLC_024

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

5WLC|1|L1|U|1004

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_024 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.3195

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5WLC|1|L1|G|997
5WLC|1|L1|A|998
5WLC|1|L1|U|999
5WLC|1|L1|C|1000
5WLC|1|L1|A|1001
5WLC|1|L1|G|1002
5WLC|1|L1|A|1003
5WLC|1|L1|U|1004
5WLC|1|L1|A|1005
5WLC|1|L1|C|1006
5WLC|1|L1|C|1007

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NH

Utp22

Chain NJ

Rrp5