HL_5WLC_027

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_027 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2241

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5WLC|1|L1|C|1501
5WLC|1|L1|G|1502
5WLC|1|L1|A|1503
5WLC|1|L1|G|1504
5WLC|1|L1|A|1505
5WLC|1|L1|G|1506

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NB

Sas10

Chain SI

Bms1

Chain SN

Utp30

Chain SY

Utp11