HL_5WLC_030

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUACACAC

Length

8 nucleotides

Bulged bases

5WLC|1|L1|C|1632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WLC_030 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3156

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

5WLC|1|L1|G|1629
5WLC|1|L1|U|1630
5WLC|1|L1|A|1631
5WLC|1|L1|C|1632
5WLC|1|L1|A|1633
5WLC|1|L1|C|1634
5WLC|1|L1|A|1635
5WLC|1|L1|C|1636

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain LO

Utp1

Chain LQ

Utp12

Chain LR

Utp13

Chain NA

Mpp10