HL_5WNQ_028

3D structure

PDB id

5WNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WNQ_028 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.0744

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5WNQ|1|A|G|1265
5WNQ|1|A|G|1266
5WNQ|1|A|C|1267
5WNQ|1|A|A|1268
5WNQ|1|A|A|1269
5WNQ|1|A|C|1270

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19

Chain U

30S ribosomal protein Thx