HL_5WNQ_028
3D structure
- PDB id
- 5WNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GGCAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WNQ_028 not in the Motif Atlas
- Homologous match to HL_4LFB_028
- Geometric discrepancy: 0.0744
- The information below is about HL_4LFB_028
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
5WNQ|1|A|G|1265
5WNQ|1|A|G|1266
5WNQ|1|A|C|1267
5WNQ|1|A|A|1268
5WNQ|1|A|A|1269
5WNQ|1|A|C|1270
Current chains
- Chain A
- 16S Ribosomal RNA rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S19
- Chain U
- 30S ribosomal protein Thx
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