3D structure

PDB id
5WNU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
5WNU|1|A|G|1094
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5WNU_025 not in the Motif Atlas
Homologous match to HL_4LFB_025
Geometric discrepancy: 0.0947
The information below is about HL_4LFB_025
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_77436.5
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

5WNU|1|A|G|1089
5WNU|1|A|U|1090
5WNU|1|A|U|1091
5WNU|1|A|A|1092
5WNU|1|A|A|1093
5WNU|1|A|G|1094
5WNU|1|A|U|1095
5WNU|1|A|C|1096

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain G
30S ribosomal protein S7

Coloring options:


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