HL_5WTI_002

3D structure

PDB id

5WTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the CRISPR-associated protein in complex with crRNA and DNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.68 Å

Loop

Sequence

GUGAGAAAC

Length

9 nucleotides

Bulged bases

5WTI|1|B|U|54

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WTI_002 not in the Motif Atlas

Geometric match to HL_6JXM_002

Geometric discrepancy: 0.2636

The information below is about HL_6JXM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5WTI|1|B|G|53
5WTI|1|B|U|54
5WTI|1|B|G|57
5WTI|1|B|A|58
5WTI|1|B|G|59
5WTI|1|B|A|60
5WTI|1|B|A|61
5WTI|1|B|A|62
5WTI|1|B|C|63

Current chains

Chain B

RNA (123-MER)

Nearby chains

Chain Z

CRISPR-associated protein