HL_5WYJ_006

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GCAUAUU

Length

7 nucleotides

Bulged bases

5WYJ|1|5A|U|253, 5WYJ|1|5A|A|260

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_006 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3616

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5WYJ|1|5A|G|250
5WYJ|1|5A|C|251
5WYJ|1|5A|A|252
5WYJ|1|5A|U|253
5WYJ|1|5A|A|260
5WYJ|1|5A|U|261
5WYJ|1|5A|U|262

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain U5

Ribosome biogenesis protein UTP30