5WYJ | Motifs

33 Hairpin loops
106 Internal loops
14 Junction loops

Valid loops

No loops found

Problematic loops

loop id	Problem	Sequence
HL_5WYJ_001	missing nts	No text annotation
HL_5WYJ_002	missing nts	No text annotation
HL_5WYJ_003	missing nts	No text annotation
HL_5WYJ_004	poor quality numbers	No text annotation
HL_5WYJ_005	poor quality numbers	GNRA
HL_5WYJ_006	missing nts	No text annotation
HL_5WYJ_007	poor quality numbers	GNRA related
HL_5WYJ_008	missing nts	No text annotation
HL_5WYJ_009	Deprecated	No text annotation
HL_5WYJ_032	poor quality numbers	No text annotation
HL_5WYJ_010	missing nts	Mini UNCG
HL_5WYJ_011	poor quality numbers	No text annotation
HL_5WYJ_012	poor quality numbers	No text annotation
HL_5WYJ_013	missing nts	No text annotation
HL_5WYJ_014	poor quality numbers	Mini UNCG
HL_5WYJ_015	poor quality numbers	GNRA related
HL_5WYJ_016	poor quality numbers	No text annotation
HL_5WYJ_017	poor quality numbers	No text annotation
HL_5WYJ_018	poor quality numbers	UNCG
HL_5WYJ_019	poor quality numbers	No text annotation
HL_5WYJ_020	poor quality numbers	UNCG variation
HL_5WYJ_021	poor quality numbers	No text annotation
HL_5WYJ_022	poor quality numbers	No text annotation
HL_5WYJ_023	missing nts	No text annotation
HL_5WYJ_024	poor quality numbers	No text annotation
HL_5WYJ_025	poor quality numbers	GNRA
HL_5WYJ_026	poor quality numbers	No text annotation
HL_5WYJ_027	Deprecated	No text annotation
HL_5WYJ_033	poor quality numbers	GNRA wlth extra near cWW
HL_5WYJ_028	poor quality numbers	GNRA
HL_5WYJ_029	poor quality numbers	No text annotation
HL_5WYJ_030	missing nts	No text annotation
HL_5WYJ_031	poor quality numbers	GNRA related

Valid loops

No loops found

Problematic loops

loop id	Problem	Sequence
IL_5WYJ_001	poor quality numbers	Tandem non-canonical cWW pairs
IL_5WYJ_088	poor quality numbers	No text annotation
IL_5WYJ_002	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_003	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_004	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_005	poor quality numbers	No text annotation
IL_5WYJ_006	missing nts	No text annotation
IL_5WYJ_007	poor quality numbers	No text annotation
IL_5WYJ_008	poor quality numbers	No text annotation
IL_5WYJ_009	poor quality numbers	Single stack bend
IL_5WYJ_010	Deprecated	Isolated non-canonical cWW pair
IL_5WYJ_089	poor quality numbers	Multiple bulged bases
IL_5WYJ_011	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_012	poor quality numbers	No text annotation
IL_5WYJ_102	poor quality numbers	Multiple bulged bases
IL_5WYJ_013	Deprecated	Isolated non-canonical cWW pair
IL_5WYJ_103	poor quality numbers	No text annotation
IL_5WYJ_014	Deprecated	No text annotation
IL_5WYJ_090	Deprecated	No text annotation
IL_5WYJ_015	poor quality numbers	No text annotation
IL_5WYJ_016	poor quality numbers	No text annotation
IL_5WYJ_017	poor quality numbers	No text annotation
IL_5WYJ_091	Deprecated	Isolated non-canonical cWW pair
IL_5WYJ_018	poor quality numbers	Single bulged U
IL_5WYJ_092	poor quality numbers	No text annotation
IL_5WYJ_019	Deprecated	No text annotation
IL_5WYJ_020	poor quality numbers	Single bulged U
IL_5WYJ_021	poor quality numbers	Tandem non-canonical cWW pairs
IL_5WYJ_022	poor quality numbers	No text annotation
IL_5WYJ_023	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_093	Deprecated	No text annotation
IL_5WYJ_024	poor quality numbers	No text annotation
IL_5WYJ_025	poor quality numbers	Minor groove platform
IL_5WYJ_026	poor quality numbers	No text annotation
IL_5WYJ_027	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_028	poor quality numbers	Single stack bend
IL_5WYJ_029	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_030	poor quality numbers	Tandem non-canonical cWW pairs
IL_5WYJ_031	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_032	poor quality numbers	No text annotation
IL_5WYJ_033	poor quality numbers	Minor groove platform
IL_5WYJ_034	poor quality numbers	Tandem non-canonical cWW pairs
IL_5WYJ_035	poor quality numbers	Multiple bulged bases
IL_5WYJ_036	poor quality numbers	No text annotation
IL_5WYJ_094	Deprecated	No text annotation
IL_5WYJ_037	poor quality numbers	tWH-tWH-tHW-tHW
IL_5WYJ_038	poor quality numbers	Isolated non-canonical cWW contact
IL_5WYJ_039	poor quality numbers	Double sheared
IL_5WYJ_040	poor quality numbers	Major groove platform with extra cWW
IL_5WYJ_041	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_095	poor quality numbers	Single bulged A
IL_5WYJ_042	Deprecated	Isolated non-canonical cWW pair
IL_5WYJ_043	poor quality numbers	No text annotation
IL_5WYJ_044	poor quality numbers	Intercalated cWW
IL_5WYJ_045	poor quality numbers	Kink-turn with non-sequential stacking
IL_5WYJ_046	poor quality numbers	No text annotation
IL_5WYJ_047	poor quality numbers	No text annotation
IL_5WYJ_048	poor quality numbers	Isolated cWH basepair
IL_5WYJ_049	poor quality numbers	C-loop
IL_5WYJ_050	poor quality numbers	Single bulged G
IL_5WYJ_051	poor quality numbers	No text annotation
IL_5WYJ_096	Deprecated	No text annotation
IL_5WYJ_052	poor quality numbers	Minor groove platform
IL_5WYJ_104	poor quality numbers	Double sheared
IL_5WYJ_053	poor quality numbers	Minor groove platform
IL_5WYJ_054	missing nts	Isolated near basepair
IL_5WYJ_055	missing nts	No text annotation
IL_5WYJ_056	poor quality numbers	tSH-tHW-tHS
IL_5WYJ_057	poor quality numbers	Major groove platform; stack outside cWW
IL_5WYJ_058	Deprecated	Isolated non-canonical cWW pair
IL_5WYJ_105	poor quality numbers	Single bulged U
IL_5WYJ_097	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_059	Deprecated	Tandem non-canonical cWW pairs
IL_5WYJ_060	poor quality numbers	Tandem non-canonical cWW pairs
IL_5WYJ_061	Deprecated	Tandem non-canonical cWW pairs
IL_5WYJ_106	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_062	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_098	poor quality numbers	No text annotation
IL_5WYJ_063	poor quality numbers	Kink-turn
IL_5WYJ_064	poor quality numbers	Tandem non-canonical cWW pairs
IL_5WYJ_065	poor quality numbers	No text annotation
IL_5WYJ_066	poor quality numbers	Single bulged G
IL_5WYJ_067	poor quality numbers	No text annotation
IL_5WYJ_068	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_069	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_070	poor quality numbers	No text annotation
IL_5WYJ_099	poor quality numbers	No text annotation
IL_5WYJ_071	poor quality numbers	No text annotation
IL_5WYJ_100	Deprecated	Tandem non-canonical cWW pairs
IL_5WYJ_072	poor quality numbers	No text annotation
IL_5WYJ_073	poor quality numbers	Single bulged U
IL_5WYJ_074	Deprecated	No text annotation
IL_5WYJ_101	poor quality numbers	No text annotation
IL_5WYJ_075	poor quality numbers	No text annotation
IL_5WYJ_076	poor quality numbers	Single bulged A
IL_5WYJ_077	missing nts	No text annotation
IL_5WYJ_078	poor quality numbers	Tandem non-canonical cWW pairs
IL_5WYJ_079	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_080	poor quality numbers	No text annotation
IL_5WYJ_081	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_082	poor quality numbers	Double sheared
IL_5WYJ_083	poor quality numbers	No text annotation
IL_5WYJ_084	poor quality numbers	Isolated non-canonical cWW pair
IL_5WYJ_085	poor quality numbers	Double sheared
IL_5WYJ_086	poor quality numbers	Isolated non-canonical cWW contact
IL_5WYJ_087	poor quality numbers	Tandem non-canonical cWW pairs

Valid loops

No loops found

Problematic loops

loop id	Problem	Sequence
J3_5WYJ_001	Deprecated	No text annotation
J3_5WYJ_009	poor quality numbers	No text annotation
J3_5WYJ_006	Deprecated	No text annotation
J3_5WYJ_002	poor quality numbers	No text annotation
J3_5WYJ_007	poor quality numbers	No text annotation
J3_5WYJ_003	poor quality numbers	No text annotation
J3_5WYJ_008	poor quality numbers	No text annotation
J3_5WYJ_004	poor quality numbers	No text annotation
J3_5WYJ_010	poor quality numbers	No text annotation
J3_5WYJ_005	Deprecated	No text annotation
J4_5WYJ_001	Deprecated	No text annotation
J4_5WYJ_002	poor quality numbers	No text annotation
J5_5WYJ_001	poor quality numbers	No text annotation
J5_5WYJ_002	poor quality numbers	No text annotation

Coloring options: Nucleotide numbers

5WYJ Hairpin, Internal, and multi-helix Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops