HL_5WYJ_011

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_011 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.1739

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

5WYJ|1|SA|G|154
5WYJ|1|SA|U|155
5WYJ|1|SA|A|156
5WYJ|1|SA|A|157
5WYJ|1|SA|U|158
5WYJ|1|SA|U|159
5WYJ|1|SA|C|160

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SH

40S ribosomal protein S6-A