HL_5WYJ_012

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

5WYJ|1|SA|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_012 not in the Motif Atlas

Homologous match to HL_8P9A_193

Geometric discrepancy: 0.5156

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

5WYJ|1|SA|C|190
5WYJ|1|SA|C|191
5WYJ|1|SA|U|192
5WYJ|1|SA|U|193
5WYJ|1|SA|U|194
5WYJ|1|SA|G|195

Current chains

Chain SA

18S ribosomal RNA

Nearby chains