HL_5WYJ_020

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5WYJ|1|SA|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_020 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3869

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5WYJ|1|SA|C|491
5WYJ|1|SA|A|492
5WYJ|1|SA|U|493
5WYJ|1|SA|U|494
5WYJ|1|SA|C|495
5WYJ|1|SA|G|496

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain Sf

40S ribosomal protein S30-A

Chain UC

Unassigned helices