HL_5WYJ_021

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_021 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.5498

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5WYJ|1|SA|A|520
5WYJ|1|SA|A|521
5WYJ|1|SA|U|522
5WYJ|1|SA|G|523
5WYJ|1|SA|U|524
5WYJ|1|SA|A|525
5WYJ|1|SA|A|526
5WYJ|1|SA|A|527
5WYJ|1|SA|U|528
5WYJ|1|SA|A|529
5WYJ|1|SA|C|530
5WYJ|1|SA|C|531
5WYJ|1|SA|U|532

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain B1

Ribosome biogenesis protein BMS1

Chain SK

40S ribosomal protein S9-A

Chain SZ

40S ribosomal protein S24-A