HL_5WYJ_023

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AACUUU

Length

6 nucleotides

Bulged bases

5WYJ|1|SA|U|638

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_023 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2714

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5WYJ|1|SA|A|635
5WYJ|1|SA|A|636
5WYJ|1|SA|C|637
5WYJ|1|SA|U|638
5WYJ|1|SA|U|860
5WYJ|1|SA|U|861

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S7-A

Chain SO

40S ribosomal protein S13

Chain SX

40S ribosomal protein S22-A