HL_5WYJ_027

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GAUUGAGAGCUC

Length

12 nucleotides

Bulged bases

5WYJ|1|SA|G|1243, 5WYJ|1|SA|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYJ|1|SA|G|1237
5WYJ|1|SA|A|1238
5WYJ|1|SA|U|1239
5WYJ|1|SA|U|1240
5WYJ|1|SA|G|1241
5WYJ|1|SA|A|1242
5WYJ|1|SA|G|1243
5WYJ|1|SA|A|1244
5WYJ|1|SA|G|1245
5WYJ|1|SA|C|1246
5WYJ|1|SA|U|1247
5WYJ|1|SA|C|1248

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E3

Essential nuclear protein 1

Chain Sg

Ubiquitin-40S ribosomal protein S31