HL_5WYJ_029

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

5WYJ|1|SA|C|1596, 5WYJ|1|SA|C|1599, 5WYJ|1|SA|G|1601

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYJ|1|SA|G|1594
5WYJ|1|SA|U|1595
5WYJ|1|SA|C|1596
5WYJ|1|SA|A|1597
5WYJ|1|SA|U|1598
5WYJ|1|SA|C|1599
5WYJ|1|SA|A|1600
5WYJ|1|SA|G|1601
5WYJ|1|SA|C|1602

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain B1

Ribosome biogenesis protein BMS1

Chain MB

U3 small nucleolar ribonucleoprotein protein IMP4