HL_5WYJ_030

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AGGAUCUGCGCGGAGAAU

Length

18 nucleotides

Bulged bases

5WYJ|1|SA|C|1686

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYJ|1|SA|A|1678
5WYJ|1|SA|G|1679
5WYJ|1|SA|G|1680
5WYJ|1|SA|A|1681
5WYJ|1|SA|U|1682
5WYJ|1|SA|C|1683
5WYJ|1|SA|U|1684
5WYJ|1|SA|G|1685
5WYJ|1|SA|C|1686
5WYJ|1|SA|G|1715
5WYJ|1|SA|C|1716
5WYJ|1|SA|G|1717
5WYJ|1|SA|G|1718
5WYJ|1|SA|A|1719
5WYJ|1|SA|G|1720
5WYJ|1|SA|A|1721
5WYJ|1|SA|A|1722
5WYJ|1|SA|U|1723

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain CB

U3 small nucleolar RNA-associated protein 22