HL_5WYJ_033

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

5WYJ|1|SA|G|1241, 5WYJ|1|SA|G|1243, 5WYJ|1|SA|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYJ_033 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.3024

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5WYJ|1|SA|A|1238
5WYJ|1|SA|U|1239
5WYJ|1|SA|U|1240
5WYJ|1|SA|G|1241
5WYJ|1|SA|A|1242
5WYJ|1|SA|G|1243
5WYJ|1|SA|A|1244
5WYJ|1|SA|G|1245
5WYJ|1|SA|C|1246
5WYJ|1|SA|U|1247

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E3

Essential nuclear protein 1

Chain Sg

Ubiquitin-40S ribosomal protein S31