HL_5WYK_013

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGAUUCAU

Length

8 nucleotides

Bulged bases

5WYK|1|SA|U|249

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYK_013 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3905

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5WYK|1|SA|A|213
5WYK|1|SA|G|214
5WYK|1|SA|A|215
5WYK|1|SA|U|216
5WYK|1|SA|U|249
5WYK|1|SA|C|250
5WYK|1|SA|A|251
5WYK|1|SA|U|252

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SM

40S ribosomal protein S11-A