HL_5WYK_018

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5WYK|1|SA|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYK_018 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.3303

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5WYK|1|SA|C|414
5WYK|1|SA|C|415
5WYK|1|SA|A|416
5WYK|1|SA|A|417
5WYK|1|SA|G|418
5WYK|1|SA|G|419

Current chains

Chain SA

18S ribosomal RNA

Nearby chains