HL_5WYK_020

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

5WYK|1|SA|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYK_020 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3466

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5WYK|1|SA|C|491
5WYK|1|SA|A|492
5WYK|1|SA|U|493
5WYK|1|SA|U|494
5WYK|1|SA|C|495
5WYK|1|SA|G|496

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain Sf

40S ribosomal protein S30-A

Chain UC

Unassigned helices