HL_5WYK_025

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WYK_025 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.193

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5WYK|1|SA|C|937
5WYK|1|SA|G|938
5WYK|1|SA|A|939
5WYK|1|SA|A|940
5WYK|1|SA|A|941
5WYK|1|SA|G|942

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain K1

KRR1 small subunit processome component

Chain SO

40S ribosomal protein S13