HL_5WYK_027

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGCACUCAACACAC

Length

14 nucleotides

Bulged bases

5WYK|1|SA|U|1191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|SA|G|1178
5WYK|1|SA|G|1179
5WYK|1|SA|C|1180
5WYK|1|SA|A|1189
5WYK|1|SA|C|1190
5WYK|1|SA|U|1191
5WYK|1|SA|C|1192
5WYK|1|SA|A|1193
5WYK|1|SA|A|1194
5WYK|1|SA|C|1195
5WYK|1|SA|A|1196
5WYK|1|SA|C|1197
5WYK|1|SA|A|1460
5WYK|1|SA|C|1461

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E1

Ribosomal RNA small subunit methyltransferase NEP1

Chain E2

Ribosomal RNA small subunit methyltransferase NEP1

Chain MB

U3 small nucleolar ribonucleoprotein protein IMP4

Chain U2

Utp11