HL_5WYK_030

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGGAUCUGCGCGGAGAAU

Length

18 nucleotides

Bulged bases

5WYK|1|SA|C|1686, 5WYK|1|SA|G|1715

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|SA|A|1678
5WYK|1|SA|G|1679
5WYK|1|SA|G|1680
5WYK|1|SA|A|1681
5WYK|1|SA|U|1682
5WYK|1|SA|C|1683
5WYK|1|SA|U|1684
5WYK|1|SA|G|1685
5WYK|1|SA|C|1686
5WYK|1|SA|G|1715
5WYK|1|SA|C|1716
5WYK|1|SA|G|1717
5WYK|1|SA|G|1718
5WYK|1|SA|A|1719
5WYK|1|SA|G|1720
5WYK|1|SA|A|1721
5WYK|1|SA|A|1722
5WYK|1|SA|U|1723

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain CB

U3 small nucleolar RNA-associated protein 22