HL_5XH7_001

3D structure

PDB id

5XH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Acidaminococcus sp. BV3L6 Cpf1 RR variant in complex with crRNA and target DNA (TCCA PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

CUCUUG

Length

6 nucleotides

Bulged bases

5XH7|1|B|U|-7

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

5XH7|1|B|C|-11
5XH7|1|B|U|-10
5XH7|1|B|C|-9
5XH7|1|B|U|-8
5XH7|1|B|U|-7
5XH7|1|B|G|-6

Current chains

Chain B

crRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cpf1