HL_5XJC_003
3D structure
- PDB id
- 5XJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGCGCAA
- Length
- 7 nucleotides
- Bulged bases
- 5XJC|1|F|C|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5XJC_003 not in the Motif Atlas
- Homologous match to HL_6ASO_001
- Geometric discrepancy: 0.3084
- The information below is about HL_6ASO_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 434
Unit IDs
5XJC|1|F|U|64
5XJC|1|F|G|65
5XJC|1|F|C|66
5XJC|1|F|G|67
5XJC|1|F|C|68
5XJC|1|F|A|69
5XJC|1|F|A|70
Current chains
- Chain F
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain B
- U5 spliceosomal RNA; U5 snRNA
- Chain G
- pre-mRNA
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain R
- SNW domain-containing protein 1
- Chain T
- Pleiotropic regulator 1
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