HL_5XYM_001
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UAGGAGGCUG
- Length
- 10 nucleotides
- Bulged bases
- 5XYM|1|A|A|60, 5XYM|1|A|G|61, 5XYM|1|A|G|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5XYM_001 not in the Motif Atlas
- Geometric match to HL_6JXM_002
- Geometric discrepancy: 0.308
- The information below is about HL_6JXM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_97725.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5XYM|1|A|U|59
5XYM|1|A|A|60
5XYM|1|A|G|61
5XYM|1|A|G|62
5XYM|1|A|A|63
5XYM|1|A|G|64
5XYM|1|A|G|65
5XYM|1|A|C|66
5XYM|1|A|U|67
5XYM|1|A|G|68
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain T
- 50S ribosomal protein L23
- Chain Y
- 50S ribosomal protein L29
Coloring options: