HL_5XYM_004

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2511

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5XYM|1|A|A|137
5XYM|1|A|G|138
5XYM|1|A|U|139
5XYM|1|A|G|140
5XYM|1|A|A|141
5XYM|1|A|U|142
5XYM|1|A|G|143
5XYM|1|A|U|144

Current chains

Chain A

23S RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain Y

50S ribosomal protein L29