HL_5XYM_010

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

5XYM|1|A|U|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_010 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.144

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5XYM|1|A|U|390
5XYM|1|A|U|391
5XYM|1|A|G|392
5XYM|1|A|G|393
5XYM|1|A|G|394
5XYM|1|A|A|395
5XYM|1|A|U|396
5XYM|1|A|G|397

Current chains

Chain A

23S RNA

Nearby chains

Chain U

50S ribosomal protein L24