HL_5XYM_013

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGCCCGUGGAAUC

Length

13 nucleotides

Bulged bases

5XYM|1|A|G|477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2317

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5XYM|1|A|G|472
5XYM|1|A|G|473
5XYM|1|A|C|474
5XYM|1|A|C|475
5XYM|1|A|C|476
5XYM|1|A|G|477
5XYM|1|A|U|478
5XYM|1|A|G|479
5XYM|1|A|G|480
5XYM|1|A|A|481
5XYM|1|A|A|482
5XYM|1|A|U|483
5XYM|1|A|C|484

Current chains

Chain A

23S RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28