HL_5XYM_018
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UUUUGAAGAA
- Length
- 10 nucleotides
- Bulged bases
- 5XYM|1|A|A|669
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5XYM_018 not in the Motif Atlas
- Homologous match to HL_4WF9_018
- Geometric discrepancy: 0.1122
- The information below is about HL_4WF9_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5XYM|1|A|U|661
5XYM|1|A|U|662
5XYM|1|A|U|663
5XYM|1|A|U|664
5XYM|1|A|G|665
5XYM|1|A|A|666
5XYM|1|A|A|667
5XYM|1|A|G|668
5XYM|1|A|A|669
5XYM|1|A|A|670
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L15
- Chain R
- 50S ribosomal protein L21
- Chain a
- Uncharacterized protein bL37
Coloring options: