HL_5XYM_033

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GCCAGUC

Length

7 nucleotides

Bulged bases

5XYM|1|A|C|1443, 5XYM|1|A|U|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_033 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.1797

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

5XYM|1|A|G|1442
5XYM|1|A|C|1443
5XYM|1|A|C|1444
5XYM|1|A|A|1445
5XYM|1|A|G|1446
5XYM|1|A|U|1447
5XYM|1|A|C|1448

Current chains

Chain A

23S RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22