HL_5XYM_038

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAG

Length

4 nucleotides

Bulged bases

5XYM|1|A|G|1789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_038 not in the Motif Atlas

Homologous match to HL_7RQB_039

Geometric discrepancy: 0.1386

The information below is about HL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38927.5

Basepair signature

cWW-F

Number of instances in this motif group

32

Unit IDs

5XYM|1|A|C|1788
5XYM|1|A|G|1789
5XYM|1|A|A|1790
5XYM|1|A|G|1791

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2