HL_5XYM_047

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5XYM|1|A|A|2140

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_047 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2171

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5XYM|1|A|G|2137
5XYM|1|A|U|2138
5XYM|1|A|A|2139
5XYM|1|A|A|2140
5XYM|1|A|C|2141
5XYM|1|A|U|2142
5XYM|1|A|A|2143
5XYM|1|A|U|2144
5XYM|1|A|A|2145
5XYM|1|A|A|2146
5XYM|1|A|C|2147

Current chains

Chain A

23S RNA

Nearby chains