HL_5XYM_049
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GUAAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5XYM|1|A|A|2257, 5XYM|1|A|A|2258, 5XYM|1|A|G|2259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5XYM_049 not in the Motif Atlas
- Homologous match to HL_7RQB_050
- Geometric discrepancy: 0.1294
- The information below is about HL_7RQB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.6
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5XYM|1|A|G|2254
5XYM|1|A|U|2255
5XYM|1|A|A|2256
5XYM|1|A|A|2257
5XYM|1|A|A|2258
5XYM|1|A|G|2259
5XYM|1|A|A|2260
5XYM|1|A|U|2261
5XYM|1|A|G|2262
5XYM|1|A|C|2263
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain a
- Uncharacterized protein bL37
Coloring options: