HL_5XYM_051

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

5XYM|1|A|A|2437, 5XYM|1|A|U|2440

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_051 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.2161

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

5XYM|1|A|G|2435
5XYM|1|A|U|2436
5XYM|1|A|A|2437
5XYM|1|A|A|2439
5XYM|1|A|U|2440
5XYM|1|A|C|2441
5XYM|1|A|C|2442

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2