HL_5XYM_055

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGUAAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_055 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1364

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5XYM|1|A|U|2551
5XYM|1|A|G|2552
5XYM|1|A|U|2553
5XYM|1|A|A|2554
5XYM|1|A|A|2555
5XYM|1|A|G|2556
5XYM|1|A|U|2557
5XYM|1|A|G|2558

Current chains

Chain A

23S RNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27