HL_5XYM_058

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGAGUGGAAG

Length

10 nucleotides

Bulged bases

5XYM|1|A|A|2633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1018

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5XYM|1|A|U|2631
5XYM|1|A|G|2632
5XYM|1|A|A|2633
5XYM|1|A|G|2634
5XYM|1|A|U|2635
5XYM|1|A|G|2636
5XYM|1|A|G|2637
5XYM|1|A|A|2638
5XYM|1|A|A|2639
5XYM|1|A|G|2640

Current chains

Chain A

23S RNA

Nearby chains

Chain L

50S ribosomal protein L15