HL_5XYM_060
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UGGAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 5XYM|1|A|G|2756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5XYM_060 not in the Motif Atlas
- Homologous match to HL_5J7L_194
- Geometric discrepancy: 0.0978
- The information below is about HL_5J7L_194
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
5XYM|1|A|U|2755
5XYM|1|A|G|2756
5XYM|1|A|G|2757
5XYM|1|A|A|2758
5XYM|1|A|G|2759
5XYM|1|A|C|2760
5XYM|1|A|A|2761
5XYM|1|A|G|2762
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
Coloring options: