HL_5XYM_074

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

5XYM|1|A|G|414, 5XYM|1|A|A|415, 5XYM|1|A|G|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYM_074 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1432

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5XYM|1|A|G|412
5XYM|1|A|U|413
5XYM|1|A|G|414
5XYM|1|A|A|415
5XYM|1|A|G|416
5XYM|1|A|A|417
5XYM|1|A|G|418
5XYM|1|A|C|419
5XYM|1|A|C|420

Current chains

Chain A

23S RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24