HL_5XYU_006

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GGGUGAUGGCC

Length

11 nucleotides

Bulged bases

5XYU|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYU_006 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3438

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

5XYU|1|A|G|258
5XYU|1|A|G|259
5XYU|1|A|G|260
5XYU|1|A|U|261
5XYU|1|A|G|262
5XYU|1|A|A|263
5XYU|1|A|U|264
5XYU|1|A|G|265
5XYU|1|A|G|266
5XYU|1|A|C|267
5XYU|1|A|C|268

Current chains

Chain A

16S RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20