HL_5XYU_009

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5XYU|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYU_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1795

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

5XYU|1|A|C|342
5XYU|1|A|U|343
5XYU|1|A|A|344
5XYU|1|A|C|345
5XYU|1|A|G|346
5XYU|1|A|G|347

Current chains

Chain A

16S RNA

Nearby chains