HL_5XYU_019

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5XYU_019 not in the Motif Atlas

Homologous match to HL_5J7L_019

Geometric discrepancy: 0.1083

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5XYU|1|A|C|844
5XYU|1|A|U|845
5XYU|1|A|A|846
5XYU|1|A|A|847
5XYU|1|A|C|848
5XYU|1|A|G|849

Current chains

Chain A

16S RNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain H

30S ribosomal protein S8